Tools for Bringing Bioinformatics into Your Undergraduate Classrooms

Posted by | May 19, 2009 | RESOURCES, UNIVERSITY+ | No Comments

Tools for Bringing Bioinformatics into Your Undergraduate Classrooms will be presented by Dr. Joanne Fox at the ASMCUE 2009 Conference in Fort Collins, Colorado. This online supplement will provide access to the teaching materials presented in this session. This toolkit consists of a set of hands-on bioinformatics “mini-labs” that we’ve been using in undergraduate classrooms for the past three years. These content modules are designed to give students hands-on guided tours of online bioinformatics tools. With subjects ranging from sequence searches to genome visualization, these materials have general appeal and are applicable to many different course settings. In this session, you will get a hands-on opportunity to try the bioinformatics “mini-labs” for yourself, access the supporting teaching materials, and understand approaches for introducing these modules into your own classrooms.

Access supporting teaching materials using the links found below:

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Mini Lab #1: NCBI’s Entrez This tutorial gives students a chance to practice advanced searching techniques using NCBI’s Entrez system.
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Mini Lab #2: BLAST Students follow a guided tour of BLAST, carry out a BLAST sequence similarity search and interpret the results.
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txtpdfBackground Lecture Notes
ppt.gifpdfFollow Up Exercise – Jurassic Park


Mini Lab #3: Genome Browsers This tutorial introduces practical skills for navigating several different genome browsers (UCSC, MapViewer, Ensembl, and Artemis).
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ppt.gifpdfBackground Lecture Slides


Mini Lab #4: Multiple Sequence Alignments Students learn how to do their own multiple sequence alignments by downloading ClustalX.
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pdfBackground Lecture Slides


Questions? Please contact Dr. Joanne Fox, joanne@msl.ubc.ca, 604-827-3911


We gratefully acknowledge the funding for the development of these teaching materials provided by UBC students through the Teaching and Learning Enhancement Fund (TLEF) from 2005-2007.

Creative Commons License.

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