Lead/Instructor: David Ng
Lab Technician: Li-Juan Sun

Molecular Biology Workshops

Professional training covering theoretical and practical (hands on) aspects of various molecular techniques.

New Date for the Molecular Biology Workshop - June 19th to 23rd, 2017 (5 Day Version - $1500 per client). Registration is now open. To inquire about registration, please click this button or contact Dr. David Ng at db at mail dot ubc dot ca.

Days: Monday to Friday
Dates: June 19 to 23, 2017
Level: Professional Development
Time: 9am – 6pm daily

Running Late? Please call the lab at 604-822-2809

Max Participants: ~10
Meeting Spot: At the AMBL lab at the Michael Smith Building (directions)
Cost: CAN$1500 or equivalent (does not include room and board)

To register, please contact Dr. David Ng at db@mail.ubc.ca or 604-822-6264

(Scroll down for more details or click here for pdf poster…)

Recent Testimonials:

“I thoroughly enjoyed this workshop. I learned lots and brushed up on my knowledge and techniques. I also learned “how to teach” and look forward to better communicating how these techniques work. Dave made it fun and and engaging! The week was intense but went by really quickly.”
Nikita Burke, Postdoctoral Fellow, The Hotchkiss Brain Institute, University of Calgary

“Excellent! For someone with very little background in molecular biology, I was able to follow everything in this workshop. Techniques that were a mystery to me were made clear. Now I understand why people use these techniques and what these outputs mean.”
Christine Weilhoefer, Assistant Professor, Department of Biology, University of Portland.

“This is a great course on molecular biology! I feel more confident about my knowledge of different techniques and ability to troubleshoot. It solidified a lot of my theoretical understanding.”
Jessica Lu, Research Program Manager, GenomeBC.

“The course was great! Dave’s teaching style was amazing for conveying the concepts behind the steps in kits and methods. As a result of this course, I feel my understanding of these molecular techniques has been greatly deepened.”
Alex Montgomery, Microbiologist, Canadian Food Inspection Agency.

“An outstanding course (from someone who normally thinks most courses and workshops are a waste of time). Excellent for someone moving from physics or chemistry into molecular biology who wants hands on laboratory technique familiarity. Excellent teaching, great lab support, and good content.”
Thomas Clark, Ph.D Student, Department of Biochemistry, University of British Columbia.

“Instructors demonstrated a real passion for teaching. A great class with thorough, well paced experiments. The information is explained in such a way as to effectively convey complex information in a clear, easy to understand fashion. I wish my university professors were all this good!”
Kenji Hara, Microbiologist, Canadian Food Inspection Agency.

“Well paced, engaging, fun and informative. Great variety of techniques and procedures presented, both low tech and high tech. Lots of hands on work to allow you to get familiar with the protocols. David is a fantastic instructor, and I can’t recommend this course enough.”
Yi Yang, Research Technician, Department of Cellular and Physiological Sciences, UBC

“This workshop was very thorough and covered an incredibly large amount of topics in a very short time. The information gathered from this workshop will certainly be beneficial in both research and teaching.”
Dr. Dewayne Stennett, Lecturer, Biochemistry, University of the West Indies, Jamaica

“Excellent workshop!! Great balance between lecture and lab, and I was very impressed on the volume of content squeezed into the five days. Dave’s delivery was very good, nice amount of light hearted humour mixed in. Highly recommended!”
David Dunn, Head, Chemistry Services Laboratory, Pacific Forestry Centre, NRC

“Great bootcamp format! I enjoyed the vast range of topics and the balance of lecture and practical hands-on techniques”
Robert Kowbel, Scientific Support Technician, Pacific Forestry Centre, NRC

“This workshop is perfect for both scientists who are new to molecular biology, as well as scientists who want a refresher. Dave has a unique ability to explain every method in a logical way. The atmosphere is absolutely amazing in the workshop. I strongly recommend this course.”
Søs Skovsø, Postdoctoral Fellow, Department of Cellular and Physiological Sciences, University of British Columbia.

More comments from previous molecular biology workshops can be found here.

 

Workshop Details

DESCRIPTION: This intense 5 day workshop will focus on a myriad of different techniques used in the molecular manipulation of DNA (general cloning, transformation, silica kits, pI kits, PCR, qPCR), RNA (isolation, reverse transcription) and protein (SDS-PAGE, 2D gels), as well as lectures that will describe some high throughput technologies such as SNP analysis, and next generation sequencing. Primarily aimed at researchers who are new to the area, familiar but require a quick updating, or theoretically familiar but lacking in practical bench training. Note: That this session will also include hands-on and theoretical content around Next Gen Sequencing (specifically around the use of the Ion Torrent system).

PHILOSOPHY: Whilst molecular techniques have evolved at a blindingly fast rate over the last few decades, the underlying biochemical principles behind the vast majority of them have actually changed little. This workshop therefore combines opportunities to perform the latest, as well as commonly used older techniques, with particular attention to the chemical nuts and bolts behind them. In all, this allows the researcher to not only gain needed practical hands-on familiarity with the techniques, but also achieve a comfortable theoretical level to allow for both (1) that all important skill of troubleshooting, and (2) the often undervalued skill of judging the utility of “tricks” that aim to speed up, or lower costs of a given methodology.

LECTURE SYLLABUS

1.1 DNA: General Info
1.2 DNA: General Workflow

2.1 DNA: Genomic/Plasmid
2.2 DNA: Cell Lysis
2.3A DNA: Nucleic Acid Purification
2.3B DNA: Nucleic Acid Purification
2.4 DNA: Precipitation
2.5 DNA: Quantitation
2.6 DNA: Agarose Gel Electrophoresis

3.1 CLONING: What is a Vector?
3.2 CLONING: Choosing a Vector I
3.3 CLONING: Choosing a Vector II
3.4 CLONING: Plasmid Preps

4.1A ENZYMES: RE Digests I
4.1B ENZYMES: RE Digests II
4.2 ENZYMES: Ligases/Phosphatases

5.1 TRANSFORMATION

6.1 PROTEINS: General Info
6.2 PROTEINS: SDS PAGE
6.3 PROTEINS: Western Blot
6.4 PROTEINS: 2D Gel Electrophoresis

7.1 RNA: General Info
7.2 RNA: Isolation and Purification
7.3 RNA: Gene Expression

8.1 PCR: The Basics
8.2 PCR: The Specifics
8.3 PCR: Troubleshooting
8.4 REAL TIME or qPCR

9.1 SEQUENCING: The basics
9.2 SEQUENCING: Next Gen Sequencing

APPENDIX A: Replication
APPENDIX B: Hybridation/Stringency

LABORATORY WORK SYLLABUS

BY STREAM

LAB A: POLYMERASE CHAIN REACTION: Technical elements and nuances for successful PCR-based procedures.

LAB B: CLONING TECHNIQUES: Including ligations, transformations, plasmid preps, etc.

LAB C: RNA WORK: Isolation/purification and reverse transcriptase assay. qPCR.

LAB D: 2D GEL ELECTROPHORESIS: 1D strip loading, IEF run, and 2nd dimension PAGE.

LAB E: DETECTION OF PROTEIN EXPRESSION FROM CLONED GENES BY WESTERN BLOTTING. SDS PAGE, transfer techniques, immunoblotting.

LAB NGS: NEXT GEN SEQUENCING: of a small bacterial genome. Library prep, Fragment clonal amplification, and semi-conductor based sequencing.

BY DAY

Workshop will begin each day at 9am sharp and usually end sometime before 6:00pm. A detailed final schedule and syllabus will be released to clients as the date draws nearer.

DAY 1:
am/pm: LAB A: DNA fingerprint assay (polymerase chain reaction)
pm: LAB D1: 2D protein gels (strip hydration)

DAY 2:
am: LAB D2: 2D protein gels (IEF focusing)
am: LAB B1: Ligation set up
am: LAB B2: Transformation procedures
pm: LAB NGS1: Library prep

DAY 3:
am/pm: LAB C1: Total RNA prep | LAB C2: Reverse Transcriptase + qPCR.
pm: LAB B3: Look at plates and set up cultures
pm: LAB E1: SDS PAGE gels (pouring gels)
pm: LAB NGS2: OneTouch 2 ISP prep

DAY 4:
am: LAB B4: Mini Plasmid preparations
am/pm: LAB D3: 2D protein gels (2nd dimension)
pm: LAB E2: SDS PAGE gels (Running and transfer of proteins)
pm: LAB NGS3: ISP qualifying and enrichment

DAY 5:
am: LAB NGS4: sequencing set up
pm: LAB E3: Western blot analysis.
pm: SPECIAL LECTURE BLOCK (covering various high through put technologies, including Next Gen Sequencing, microarrays, SNP analysis, comparative genomics, proteomics, etc)

NOTE: You can also see our 2016 editions of our lecture notes, lab manual, and NGS lab manual for a frame of reference.

 

LOCATION: Located in the heart of the UBC campus, the Michael Smith Laboratories is a testament to the vision of its founding Director, Dr. Michael Smith. Under his leadership, a gifted team of young scientists were recruited. These scientists have gone on to develop internationally renowned programs of research and training. The second and third floors of the new building are dedicated to the research facilities of the former Biotechnology Laboratory. The Stewart and Marilyn Blusson Education Forum is located on the ground floor and is open to the public. The molecular techniques workshops are held in the teaching lab, room 105 of this forum. (click here for detailed directions)

REGISTRATION DETAILS:
Registration is essentially through first: an email inquiry for space (contact Dr. David Ng at db@mail.ubc.ca), second: a verbal/email commitment and then third via an invoiced payment. Your place is essentially secured with payment, which more or less equates to a first come first serve mechanism. This payment would be a CAN$1500 cheque (or equivalent) payable to “The University of British Columbia” and sent to

Dr. David Ng
Michael Smith Laboratories
301-2185 East Mall,
University of British Columbia
Vancouver, BC, CANADA V6T 1Z3

Note that we can accommodate approximately 8 clients, but on occasion, some of these spaces are already reserved for predetermined group clients. Therefore, it’s best to put your name down as soon as possible if you are interested in the workshop.

REFUND POLICY
Your spot in the workshop is secured when we receive your payment. The deadline for receipt of payments is 30 days after the invoice date unless otherwise arranged. Note that refunds are made available until 2 weeks prior to the workshop start date – we are unable to issue any refunds after this deadline has passed.

MATERIALS: All paper materials will be provided on the first day of the workshop. Downloadable pdf versions will be available about 3 weeks before the workshop begins. Whilst we do not require the clients to “study” these documents, we do ask that clients take a moment to peruse the first day practical materials. All safety gear (including lab coats) is provided at the workshop.

ACCOMMODATIONS: Here are some accommodation options that are basically on campus. Costs involved would vary (I think the most budget option would be the Vancouver Youth Hostel which is about a 15 minute bus ride away). The closest would be those of Gage through UBC conferences. The others (except for point grey house) are all a relatively short walk away.

International Youth Hostel at Jericho Beach
UBC accomodations (on campus – note there are only 47 available)
St. John’s College (on campus)
Green College (on campus)
St. Andrew’s Hall (summer only)
Point Grey House (off campus, but only 10 minute bus ride away)

Alternatively, Downtown Vancouver offers a variety of accommodation options, but would entail about a 30-40 minute bus ride each way. Depends on your preference since the Campus is pretty quiet at night time, whereas other areas would be more interesting. Go to www.expedia.ca, and select:

hotel > near an attraction/vancouver > type in “University of British Columbia”

Usually the out of town clients make use of a little extra time after or before the workshop in visiting some of the sights Vancouver has to offer. I often strongly recommend this since the city and surrounding locale are really quite spectacular. In particular Whistler-Blackcomb is a world famous ski/outdoor resort, and is only a 2 hour drive away. Ski season usually opens in mid November (click here for more info)